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Table 2 Some examples of mapping results between abnormal state ontology and external resources. Blank cells mean that abnormal states defined in our ontology are not existent in other resources

From: Disease Compass– a navigation system for disease knowledge based on ontology and linked data techniques

Concepts Our Ontology PATO HPO MeSH SNOMED–CT
Level 1 structural abnormality     
Level 1 material degeneration PATO:0002037
degeneration
   
Level 1 hardening PATO:0000386
hard
   
Level 1 size abnormality     
Level 1 large in size PATO:0000586
increased size
   
Level 1 hyperfunction PATO:0001625
increased functionality
   
Level 1 dysfunction     
Level 1 movement abnormality    D009069
Movement Disorders
 
Level 2 narrowed cross-sectional area of tube     
Level 2 hardening of wall     
Level 2 cellular tissue necrosis PATO:0000647
necrotic
  D009336
Necrosis
 
Level 2 conoronary artery stenosis   HP:0005145
Coronary artery stenosis
D023921
Coronary Stenosis
233970002
Coronary artery stenosis
Level 2 arterial occlusion     2929001
Occlusion of artery
Level 2 coronary artery occlusion    D054059
Coronary Occlusion
63739005
Coronary occlusion
Level 2 chest pain   HP:0100749
Chest pain
D002637
Chest pain
29857009
Chest pain
Level 3 coronary artert stenosis in arteriosclerosis     
Level 3 esophagel stenosis in esophagitis